From fc5cd91abee1b539777a707a33bf0f229cd30ac7 Mon Sep 17 00:00:00 2001
From: Simone Bna <s.bn@cineca.it>
Date: Thu, 19 Nov 2020 13:22:04 +0100
Subject: [PATCH] STY: cleaning and renaming
---
Make/files | 7 +-
src/{FOAM2CSR.H => AmgXCSRMatrix.H} | 2 +-
src/{FOAM2CSR.cu => AmgXCSRMatrix.cu} | 12 +-
src/{consolidate.cu => AmgXConsolidation.cu} | 2 +-
src/AmgXMPIComms.cu | 156 ++++++
src/AmgXSolver.H | 227 ++-------
src/AmgXSolver.cu | 315 +++++++++++-
src/init.cu | 336 -------------
src/setA.cu | 490 -------------------
9 files changed, 499 insertions(+), 1048 deletions(-)
rename src/{FOAM2CSR.H => AmgXCSRMatrix.H} (99%)
rename src/{FOAM2CSR.cu => AmgXCSRMatrix.cu} (98%)
rename src/{consolidate.cu => AmgXConsolidation.cu} (99%)
create mode 100644 src/AmgXMPIComms.cu
delete mode 100644 src/init.cu
delete mode 100644 src/setA.cu
diff --git a/Make/files b/Make/files
index 1c1778a..5662037 100644
--- a/Make/files
+++ b/Make/files
@@ -1,7 +1,6 @@
-src/FOAM2CSR.cu
-src/consolidate.cu
+src/AmgXCSRMatrix.cu
+src/AmgXConsolidation.cu
+src/AmgXMPIComms.cu
src/AmgXSolver.cu
-src/init.cu
-src/setA.cu
LIB = $(FOAM_MODULE_LIBBIN)/libfoam2csr
diff --git a/src/FOAM2CSR.H b/src/AmgXCSRMatrix.H
similarity index 99%
rename from src/FOAM2CSR.H
rename to src/AmgXCSRMatrix.H
index 58bf62c..82268d8 100644
--- a/src/FOAM2CSR.H
+++ b/src/AmgXCSRMatrix.H
@@ -22,7 +22,7 @@
#pragma once
-struct FOAM2CSR
+struct AmgXCSRMatrix
{
// CSR device data for AmgX matrix
int *colIndices;
diff --git a/src/FOAM2CSR.cu b/src/AmgXCSRMatrix.cu
similarity index 98%
rename from src/FOAM2CSR.cu
rename to src/AmgXCSRMatrix.cu
index dd7b5a6..6db5131 100644
--- a/src/FOAM2CSR.cu
+++ b/src/AmgXCSRMatrix.cu
@@ -20,7 +20,8 @@
* DEALINGS IN THE SOFTWARE.
*/
-#include <FOAM2CSR.H>
+#include <AmgXCSRMatrix.H>
+
#include <cuda.h>
#include <cub/cub.cuh>
#include <thrust/scan.h>
@@ -127,7 +128,7 @@ __global__ void createRowOffsets(
}
// Updates the values based on the previously determined permutation
-void FOAM2CSR::updateValues(
+void AmgXCSRMatrix::updateValues(
const int nrows,
const int nInternalFaces,
const int extNnz,
@@ -158,7 +159,7 @@ void FOAM2CSR::updateValues(
}
// Perform the conversion between an LDU matrix and a CSR matrix, possibly distributed
-void FOAM2CSR::convertLDU2CSR(
+void AmgXCSRMatrix::convertLDU2CSR(
int nrows,
int nInternalFaces,
int diagIndexGlobal,
@@ -265,12 +266,12 @@ void FOAM2CSR::convertLDU2CSR(
// XXX Should implement an early abandonment of the
// unnecessary data for capacity optimisation
-void FOAM2CSR::discardStructure()
+void AmgXCSRMatrix::discardStructure()
{
}
// Deallocate remaining storage
-void FOAM2CSR::finalise()
+void AmgXCSRMatrix::finalise()
{
if(rowOffsets != nullptr)
CHECK(cudaFree(rowOffsets));
@@ -283,3 +284,4 @@ void FOAM2CSR::finalise()
if(ldu2csrPerm != nullptr)
CHECK(cudaFree(ldu2csrPerm));
}
+
diff --git a/src/consolidate.cu b/src/AmgXConsolidation.cu
similarity index 99%
rename from src/consolidate.cu
rename to src/AmgXConsolidation.cu
index 853a965..87e7681 100644
--- a/src/consolidate.cu
+++ b/src/AmgXConsolidation.cu
@@ -18,7 +18,7 @@
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
* DEALINGS IN THE SOFTWARE.
- * \file consolidate.cu
+ * \file AmgXConsolidation.cu
* \brief Definition of member functions related to matrix consolidation.
* \author Matt Martineau (mmartineau@nvidia.com)
* \date 2020-07-31
diff --git a/src/AmgXMPIComms.cu b/src/AmgXMPIComms.cu
new file mode 100644
index 0000000..148b255
--- /dev/null
+++ b/src/AmgXMPIComms.cu
@@ -0,0 +1,156 @@
+/**
+ * \file AmgXMPIComms.cu
+ * \brief ***.
+ * \author Pi-Yueh Chuang (pychuang@gwu.edu)
+ * \date 2015-09-01
+ * \copyright Copyright (c) 2015-2019 Pi-Yueh Chuang, Lorena A. Barba.
+ * This project is released under MIT License.
+ */
+
+// AmgXWrapper
+# include "AmgXSolver.H"
+
+
+/* \implements AmgXSolver::initMPIcomms */
+PetscErrorCode AmgXSolver::initMPIcomms(const MPI_Comm &comm)
+{
+ PetscErrorCode ierr;
+
+ PetscFunctionBeginUser;
+
+ // duplicate the global communicator
+ ierr = MPI_Comm_dup(comm, &globalCpuWorld); CHK;
+ ierr = MPI_Comm_set_name(globalCpuWorld, "globalCpuWorld"); CHK;
+
+ // get size and rank for global communicator
+ ierr = MPI_Comm_size(globalCpuWorld, &globalSize); CHK;
+ ierr = MPI_Comm_rank(globalCpuWorld, &myGlobalRank); CHK;
+
+
+ // Get the communicator for processors on the same node (local world)
+ ierr = MPI_Comm_split_type(globalCpuWorld,
+ MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &localCpuWorld); CHK;
+ ierr = MPI_Comm_set_name(localCpuWorld, "localCpuWorld"); CHK;
+
+ // get size and rank for local communicator
+ ierr = MPI_Comm_size(localCpuWorld, &localSize); CHK;
+ ierr = MPI_Comm_rank(localCpuWorld, &myLocalRank); CHK;
+
+
+ // set up the variable nDevs
+ ierr = setDeviceCount(); CHK;
+
+
+ // set up corresponding ID of the device used by each local process
+ ierr = setDeviceIDs(); CHK;
+ ierr = MPI_Barrier(globalCpuWorld); CHK;
+
+
+ // split the global world into a world involved in AmgX and a null world
+ ierr = MPI_Comm_split(globalCpuWorld, gpuProc, 0, &gpuWorld); CHK;
+
+ // get size and rank for the communicator corresponding to gpuWorld
+ if (gpuWorld != MPI_COMM_NULL)
+ {
+ ierr = MPI_Comm_set_name(gpuWorld, "gpuWorld"); CHK;
+ ierr = MPI_Comm_size(gpuWorld, &gpuWorldSize); CHK;
+ ierr = MPI_Comm_rank(gpuWorld, &myGpuWorldRank); CHK;
+ }
+ else // for those can not communicate with GPU devices
+ {
+ gpuWorldSize = MPI_UNDEFINED;
+ myGpuWorldRank = MPI_UNDEFINED;
+ }
+
+ // split local world into worlds corresponding to each CUDA device
+ ierr = MPI_Comm_split(localCpuWorld, devID, 0, &devWorld); CHK;
+ ierr = MPI_Comm_set_name(devWorld, "devWorld"); CHK;
+
+ // get size and rank for the communicator corresponding to myWorld
+ ierr = MPI_Comm_size(devWorld, &devWorldSize); CHK;
+ ierr = MPI_Comm_rank(devWorld, &myDevWorldRank); CHK;
+
+ ierr = MPI_Barrier(globalCpuWorld); CHK;
+
+ return 0;
+}
+
+
+/* \implements AmgXSolver::setDeviceCount */
+PetscErrorCode AmgXSolver::setDeviceCount()
+{
+ PetscErrorCode ierr;
+
+ PetscFunctionBeginUser;
+
+ // get the number of devices that AmgX solvers can use
+ switch (mode)
+ {
+ case AMGX_mode_dDDI: // for GPU cases, nDevs is the # of local GPUs
+ case AMGX_mode_dDFI: // for GPU cases, nDevs is the # of local GPUs
+ case AMGX_mode_dFFI: // for GPU cases, nDevs is the # of local GPUs
+ // get the number of total cuda devices
+ CHECK(cudaGetDeviceCount(&nDevs));
+ ierr = PetscPrintf(localCpuWorld, "Number of GPU devices :: %d \n", nDevs); CHK;
+
+ // Check whether there is at least one CUDA device on this node
+ if (nDevs == 0) SETERRQ1(MPI_COMM_WORLD, PETSC_ERR_SUP_SYS,
+ "There is no CUDA device on the node %s !\n", nodeName.c_str());
+ break;
+ case AMGX_mode_hDDI: // for CPU cases, nDevs is the # of local processes
+ case AMGX_mode_hDFI: // for CPU cases, nDevs is the # of local processes
+ case AMGX_mode_hFFI: // for CPU cases, nDevs is the # of local processes
+ default:
+ nDevs = localSize;
+ break;
+ }
+
+ PetscFunctionReturn(0);
+}
+
+
+/* \implements AmgXSolver::setDeviceIDs */
+PetscErrorCode AmgXSolver::setDeviceIDs()
+{
+ PetscFunctionBeginUser;
+
+ PetscErrorCode ierr;
+
+ // set the ID of device that each local process will use
+ if (nDevs == localSize) // # of the devices and local precosses are the same
+ {
+ devID = myLocalRank;
+ gpuProc = 0;
+ }
+ else if (nDevs > localSize) // there are more devices than processes
+ {
+ ierr = PetscPrintf(localCpuWorld, "CUDA devices on the node %s "
+ "are more than the MPI processes launched. Only %d CUDA "
+ "devices will be used.\n", nodeName.c_str(), localSize); CHK;
+
+ devID = myLocalRank;
+ gpuProc = 0;
+ }
+ else // there more processes than devices
+ {
+ int nBasic = localSize / nDevs,
+ nRemain = localSize % nDevs;
+
+ if (myLocalRank < (nBasic+1)*nRemain)
+ {
+ devID = myLocalRank / (nBasic + 1);
+ if (myLocalRank % (nBasic + 1) == 0) gpuProc = 0;
+ }
+ else
+ {
+ devID = (myLocalRank - (nBasic+1)*nRemain) / nBasic + nRemain;
+ if ((myLocalRank - (nBasic+1)*nRemain) % nBasic == 0) gpuProc = 0;
+ }
+ }
+
+ // Set the device for each rank
+ cudaSetDevice(devID);
+
+ PetscFunctionReturn(0);
+}
+
diff --git a/src/AmgXSolver.H b/src/AmgXSolver.H
index 7070573..bd6b69c 100644
--- a/src/AmgXSolver.H
+++ b/src/AmgXSolver.H
@@ -23,7 +23,6 @@
# include <amgx_c.h>
// PETSc
-# include <petscmat.h>
# include <petscvec.h>
@@ -92,7 +91,6 @@ class AmgXSolver
/** \brief Default constructor. */
AmgXSolver() = default;
-
/** \brief Construct a AmgXSolver instance.
*
* \param comm [in] MPI communicator.
@@ -102,11 +100,9 @@ class AmgXSolver
AmgXSolver(const MPI_Comm &comm,
const std::string &modeStr, const std::string &cfgFile);
-
/** \brief Destructor. */
~AmgXSolver();
-
/** \brief Initialize a AmgXSolver instance.
*
* \param comm [in] MPI communicator.
@@ -118,7 +114,6 @@ class AmgXSolver
PetscErrorCode initialize(const MPI_Comm &comm,
const std::string &modeStr, const std::string &cfgFile);
-
/** \brief Finalize this instance.
*
* This function destroys AmgX data. When there are more than one
@@ -129,23 +124,6 @@ class AmgXSolver
*/
PetscErrorCode finalize();
-
- /** \brief Set up the matrix used by AmgX.
- *
- * This function will automatically convert PETSc matrix to AmgX matrix.
- * If the number of MPI processes is higher than the number of available
- * GPU devices, we also redistribute the matrix in this function and
- * upload redistributed one to GPUs.
- *
- * Note: currently we can only handle AIJ/MPIAIJ format.
- *
- * \param A [in] A PETSc Mat.
- *
- * \return PetscErrorCode.
- */
- PetscErrorCode setA(const Mat &A);
-
-
/** \brief Set up the matrix used by AmgX.
*
* This function sets up the AmgX matrix from the provided CSR data
@@ -171,7 +149,6 @@ class AmgXSolver
const PetscScalar* values,
const PetscInt* partData);
-
/** \brief Re-sets up an existing AmgX matrix.
*
* Replaces the matrix coefficients with the provided values and performs
@@ -188,7 +165,6 @@ class AmgXSolver
const PetscInt nLocalNz,
const PetscScalar* values);
-
/** \brief Solve the linear system.
*
* \p p vector will be used as an initial guess and will be updated to the
@@ -206,7 +182,6 @@ class AmgXSolver
*/
PetscErrorCode solve(Vec &p, Vec &b, const int nRows);
-
/** \brief Get the number of iterations of the last solving.
*
* \param iter [out] Number of iterations.
@@ -215,7 +190,6 @@ class AmgXSolver
*/
PetscErrorCode getIters(int &iter);
-
/** \brief Get the residual at a specific iteration during the last solving.
*
* \param iter [in] Target iteration.
@@ -243,8 +217,6 @@ class AmgXSolver
std::string nodeName;
-
-
/** \brief Number of local GPU devices used by AmgX.*/
PetscMPIInt nDevs;
@@ -291,8 +263,6 @@ class AmgXSolver
PetscMPIInt myDevWorldRank;
-
-
/** \brief A parameter used by AmgX. */
int ring;
@@ -322,6 +292,48 @@ class AmgXSolver
*/
static AMGX_resources_handle rsrc;
+
+ /** \brief Enumeration for the status of matrix consolidation for the solver.*/
+ enum class ConsolidationStatus {
+ Uninitialized,
+ None,
+ Host,
+ Device
+ } consolidationStatus;
+
+ /** \brief The number of non-zeros consolidated from multiple ranks to a device.*/
+ int nConsNz = 0;
+
+ /** \brief The number of rows consolidated from multiple ranks to a device.*/
+ int nConsRows = 0;
+
+ /** \brief The row offsets consolidated onto a single device.*/
+ PetscInt *rowOffsetsCons = nullptr;
+
+ /** \brief The global column indices consolidated onto a single device.*/
+ PetscInt *colIndicesGlobalCons = nullptr;
+
+ /** \brief The values consolidated onto a single device.*/
+ PetscScalar* valuesCons = nullptr;
+
+ /** \brief The solution vector consolidated onto a single device.*/
+ PetscScalar* pCons = nullptr;
+
+ /** \brief The RHS vector consolidated onto a single device.*/
+ PetscScalar* rhsCons = nullptr;
+
+ /** \brief The number of rows per rank associated with a single device.*/
+ std::vector<int> nRowsInDevWorld;
+
+ /** \brief The number of non-zeros per rank associated with a single device.*/
+ std::vector<int> nnzInDevWorld;
+
+ /** \brief The row displacements per rank associated with a single device.*/
+ std::vector<int> rowDispls;
+
+ /** \brief The non-zero displacements per rank associated with a single device.*/
+ std::vector<int> nzDispls;
+
/** \brief Initialize consolidation, if required. Allocates space to hold
* consolidated CSR matrix and solution/RHS vectors on the root rank and,
* if device pointer consolidation, allocates and opens IPC memory handles.
@@ -384,63 +396,6 @@ class AmgXSolver
*/
PetscErrorCode finalizeConsolidation();
- /** \brief Enumeration for the status of matrix consolidation for the solver.*/
- enum class ConsolidationStatus {
- Uninitialized,
- None,
- Host,
- Device
- } consolidationStatus;
-
- /** \brief The number of non-zeros consolidated from multiple ranks to a device.*/
- int nConsNz = 0;
-
- /** \brief The number of rows consolidated from multiple ranks to a device.*/
- int nConsRows = 0;
-
- /** \brief The row offsets consolidated onto a single device.*/
- PetscInt *rowOffsetsCons = nullptr;
-
- /** \brief The global column indices consolidated onto a single device.*/
- PetscInt *colIndicesGlobalCons = nullptr;
-
- /** \brief The values consolidated onto a single device.*/
- PetscScalar* valuesCons = nullptr;
-
- /** \brief The solution vector consolidated onto a single device.*/
- PetscScalar* pCons = nullptr;
-
- /** \brief The RHS vector consolidated onto a single device.*/
- PetscScalar* rhsCons = nullptr;
-
- /** \brief The number of rows per rank associated with a single device.*/
- std::vector<int> nRowsInDevWorld;
-
- /** \brief The number of non-zeros per rank associated with a single device.*/
- std::vector<int> nnzInDevWorld;
-
- /** \brief The row displacements per rank associated with a single device.*/
- std::vector<int> rowDispls;
-
- /** \brief The non-zero displacements per rank associated with a single device.*/
- std::vector<int> nzDispls;
-
- /** \brief A VecScatter for gathering/scattering between original PETSc
- * Vec and temporary redistributed PETSc Vec.*/
- VecScatter scatterLhs = nullptr;
-
- /** \brief A VecScatter for gathering/scattering between original PETSc
- * Vec and temporary redistributed PETSc Vec.*/
- VecScatter scatterRhs = nullptr;
-
- /** \brief A temporary PETSc Vec holding redistributed unknowns. */
- Vec redistLhs = nullptr;
-
- /** \brief A temporary PETSc Vec holding redistributed RHS. */
- Vec redistRhs = nullptr;
-
-
-
/** \brief Set AmgX solver mode based on the user-provided string.
*
@@ -451,21 +406,18 @@ class AmgXSolver
*/
PetscErrorCode setMode(const std::string &modeStr);
-
/** \brief Get the number of GPU devices on this computing node.
*
* \return PetscErrorCode.
*/
PetscErrorCode setDeviceCount();
-
/** \brief Set the ID of the corresponding GPU used by this process.
*
* \return PetscErrorCode.
*/
PetscErrorCode setDeviceIDs();
-
/** \brief Initialize all MPI communicators.
*
* The \p comm provided will be duplicated and saved to the
@@ -476,7 +428,6 @@ class AmgXSolver
*/
PetscErrorCode initMPIcomms(const MPI_Comm &comm);
-
/** \brief Perform necessary initialization of AmgX.
*
* This function initializes AmgX for current instance. Based on
@@ -487,100 +438,6 @@ class AmgXSolver
* \return PetscErrorCode.
*/
PetscErrorCode initAmgX(const std::string &cfgFile);
-
-
- /** \brief Get IS for the row indices that processes in
- * \ref AmgXSolver::gpuWorld "gpuWorld" will held.
- *
- * \param A [in] PETSc matrix.
- * \param devIS [out] PETSc IS.
- * \return PetscErrorCode.
- */
- PetscErrorCode getDevIS(const Mat &A, IS &devIS);
-
-
- /** \brief Get local sequential PETSc Mat of the redistributed matrix.
- *
- * \param A [in] Original PETSc Mat.
- * \param devIS [in] PETSc IS representing redistributed row indices.
- * \param localA [out] Local sequential redistributed matrix.
- * \return PetscErrorCode.
- */
- PetscErrorCode getLocalA(const Mat &A, const IS &devIS, Mat &localA);
-
-
- /** \brief Redistribute matrix.
- *
- * \param A [in] Original PETSc Mat object.
- * \param devIS [in] PETSc IS representing redistributed rows.
- * \param newA [out] Redistributed matrix.
- * \return PetscErrorCode.
- */
- PetscErrorCode redistMat(const Mat &A, const IS &devIS, Mat &newA);
-
-
- /** \brief Get \ref AmgXSolver::scatterLhs "scatterLhs" and
- * \ref AmgXSolver::scatterRhs "scatterRhs".
- *
- * \param A1 [in] Original PETSc Mat object.
- * \param A2 [in] Redistributed PETSc Mat object.
- * \param devIS [in] PETSc IS representing redistributed row indices.
- * \return PetscErrorCode.
- */
- PetscErrorCode getVecScatter(const Mat &A1, const Mat &A2, const IS &devIS);
-
-
- /** \brief Get data of compressed row layout of local sparse matrix.
- *
- * \param localA [in] Sequential local redistributed PETSc Mat.
- * \param localN [out] Number of local rows.
- * \param row [out] Row vector in compressed row layout.
- * \param col [out] Column vector in compressed row layout.
- * \param data [out] Data vector in compressed row layout.
- * \return PetscErrorCode.
- */
- PetscErrorCode getLocalMatRawData(const Mat &localA,
- PetscInt &localN, std::vector<PetscInt> &row,
- std::vector<PetscInt64> &col, std::vector<PetscScalar> &data);
-
-
- /** \brief Destroy the sequential local redistributed matrix.
- *
- * \param A [in] Original PETSc Mat.
- * \param localA [in, out] Local matrix, returning null pointer.
- * \return PetscErrorCode.
- */
- PetscErrorCode destroyLocalA(const Mat &A, Mat &localA);
-
- /** \brief Check whether the global matrix distribution is contiguous
- *
- * If the global matrix is distributed such that contiguous chunks of rows are
- * distributed over the individual ranks in ascending rank order, the partition vector
- * has trivial structure (i.e. [0, ..., 0, 1, ..., 1, ..., R-1, ..., R-1] for R ranks) and
- * its calculation can be skipped since all information is available to AmgX through
- * the number of ranks and the partition *offsets* (i.e. how many rows are on each rank).
- *
- * \param devIS [in] PETSc IS representing redistributed row indices.
- * \param isContiguous [out] Whether the global matrix is contiguously distributed.
- * \param partOffsets [out] If contiguous, holds the partition offsets for all R ranks
- * \return PetscErrorCode.
- */
- PetscErrorCode checkForContiguousPartitioning(
- const IS &devIS, PetscBool &isContiguous, std::vector<PetscInt> &partOffsets);
-
- /** \brief Get partition data required by AmgX.
- *
- * \param devIS [in] PETSc IS representing redistributed row indices.
- * \param N [in] Total number of rows in global matrix.
- * \param partData [out] Partition data, either explicit vector or offsets.
- * \param usesOffsets [out] If PETSC_TRUE, partitioning is contiguous and partData contains
- * partition offsets, see checkForContiguousPartitioning(). Otherwise, contains explicit
- * partition vector.
- * \return PetscErrorCode.
- */
- PetscErrorCode getPartData(const IS &devIS,
- const PetscInt &N, std::vector<PetscInt> &partData, PetscBool &usesOffsets);
-
};
#endif
diff --git a/src/AmgXSolver.cu b/src/AmgXSolver.cu
index c628917..c92ee06 100644
--- a/src/AmgXSolver.cu
+++ b/src/AmgXSolver.cu
@@ -7,11 +7,9 @@
* This project is released under MIT License.
*/
-
// AmgXWrapper
# include "AmgXSolver.H"
-
// initialize AmgXSolver::count to 0
int AmgXSolver::count = 0;
@@ -19,6 +17,295 @@ int AmgXSolver::count = 0;
AMGX_resources_handle AmgXSolver::rsrc = nullptr;
+/* \implements AmgXSolver::AmgXSolver */
+AmgXSolver::AmgXSolver(const MPI_Comm &comm,
+ const std::string &modeStr, const std::string &cfgFile)
+{
+ initialize(comm, modeStr, cfgFile);
+}
+
+
+/* \implements AmgXSolver::~AmgXSolver */
+AmgXSolver::~AmgXSolver()
+{
+ if (isInitialized) finalize();
+}
+
+
+/* \implements AmgXSolver::initialize */
+PetscErrorCode AmgXSolver::initialize(const MPI_Comm &comm,
+ const std::string &modeStr, const std::string &cfgFile)
+{
+ PetscErrorCode ierr;
+
+ PetscFunctionBeginUser;
+
+ // if this instance has already been initialized, skip
+ if (isInitialized) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE,
+ "This AmgXSolver instance has been initialized on this process.");
+
+ // increase the number of AmgXSolver instances
+ count += 1;
+
+ // get the name of this node
+ int len;
+ char name[MPI_MAX_PROCESSOR_NAME];
+ ierr = MPI_Get_processor_name(name, &len); CHK;
+ nodeName = name;
+
+ // get the mode of AmgX solver
+ ierr = setMode(modeStr); CHK;
+
+ // initialize communicators and corresponding information
+ ierr = initMPIcomms(comm); CHK;
+
+ // only processes in gpuWorld are required to initialize AmgX
+ if (gpuProc == 0)
+ {
+ ierr = initAmgX(cfgFile); CHK;
+ }
+
+ // a bool indicating if this instance is initialized
+ isInitialized = true;
+
+ consolidationStatus = ConsolidationStatus::Uninitialized;
+
+ PetscFunctionReturn(0);
+}
+
+
+/* \implements AmgXSolver::setMode */
+PetscErrorCode AmgXSolver::setMode(const std::string &modeStr)
+{
+ PetscFunctionBeginUser;
+
+ if (modeStr == "dDDI")
+ mode = AMGX_mode_dDDI;
+ else if (modeStr == "dDFI")
+ mode = AMGX_mode_dDFI;
+ else if (modeStr == "dFFI")
+ mode = AMGX_mode_dFFI;
+ else if (modeStr[0] == 'h')
+ SETERRQ1(MPI_COMM_WORLD, PETSC_ERR_ARG_WRONG,
+ "CPU mode, %s, is not supported in this wrapper!",
+ modeStr.c_str());
+ else
+ SETERRQ1(MPI_COMM_WORLD, PETSC_ERR_ARG_WRONG,
+ "%s is not an available mode! Available modes are: "
+ "dDDI, dDFI, dFFI.\n", modeStr.c_str());
+
+ PetscFunctionReturn(0);
+}
+
+
+/* \implements AmgXSolver::initAmgX */
+PetscErrorCode AmgXSolver::initAmgX(const std::string &cfgFile)
+{
+ PetscFunctionBeginUser;
+
+ // only the first instance (AmgX solver) is in charge of initializing AmgX
+ if (count == 1)
+ {
+ // initialize AmgX
+ AMGX_SAFE_CALL(AMGX_initialize());
+
+ // intialize AmgX plugings
+ AMGX_SAFE_CALL(AMGX_initialize_plugins());
+
+ // only the master process can output something on the screen
+ AMGX_SAFE_CALL(AMGX_register_print_callback(
+ [](const char *msg, int length)->void
+ {PetscPrintf(PETSC_COMM_WORLD, "%s", msg);}));
+
+ // let AmgX to handle errors returned
+ AMGX_SAFE_CALL(AMGX_install_signal_handler());
+ }
+
+ // create an AmgX configure object
+ AMGX_SAFE_CALL(AMGX_config_create_from_file(&cfg, cfgFile.c_str()));
+
+ // let AmgX handle returned error codes internally
+ AMGX_SAFE_CALL(AMGX_config_add_parameters(&cfg, "exception_handling=1"));
+
+ // create an AmgX resource object, only the first instance is in charge
+ if (count == 1) AMGX_resources_create(&rsrc, cfg, &gpuWorld, 1, &devID);
+
+ // create AmgX vector object for unknowns and RHS
+ AMGX_vector_create(&AmgXP, rsrc, mode);
+ AMGX_vector_create(&AmgXRHS, rsrc, mode);
+
+ // create AmgX matrix object for unknowns and RHS
+ AMGX_matrix_create(&AmgXA, rsrc, mode);
+
+ // create an AmgX solver object
+ AMGX_solver_create(&solver, rsrc, mode, cfg);
+
+ // obtain the default number of rings based on current configuration
+ AMGX_config_get_default_number_of_rings(cfg, &ring);
+
+ PetscFunctionReturn(0);
+}
+
+
+/* \implements AmgXSolver::finalize */
+PetscErrorCode AmgXSolver::finalize()
+{
+ PetscErrorCode ierr;
+
+ PetscFunctionBeginUser;
+
+ // skip if this instance has not been initialized
+ if (! isInitialized)
+ {
+ ierr = PetscPrintf(PETSC_COMM_WORLD,
+ "This AmgXWrapper has not been initialized. "
+ "Please initialize it before finalization.\n"); CHK;
+
+ PetscFunctionReturn(0);
+ }
+
+ // only processes using GPU are required to destroy AmgX content
+ if (gpuProc == 0)
+ {
+ // destroy solver instance
+ AMGX_solver_destroy(solver);
+
+ // destroy matrix instance
+ AMGX_matrix_destroy(AmgXA);
+
+ // destroy RHS and unknown vectors
+ AMGX_vector_destroy(AmgXP);
+ AMGX_vector_destroy(AmgXRHS);
+
+ // only the last instance need to destroy resource and finalizing AmgX
+ if (count == 1)
+ {
+ AMGX_resources_destroy(rsrc);
+ AMGX_SAFE_CALL(AMGX_config_destroy(cfg));
+
+ AMGX_SAFE_CALL(AMGX_finalize_plugins());
+ AMGX_SAFE_CALL(AMGX_finalize());
+ }
+ else
+ {
+ AMGX_config_destroy(cfg);
+ }
+
+ // destroy gpuWorld
+ ierr = MPI_Comm_free(&gpuWorld); CHK;
+ }
+
+ finalizeConsolidation();
+
+ // re-set necessary variables in case users want to reuse
+ // the variable of this instance for a new instance
+ gpuProc = MPI_UNDEFINED;
+ ierr = MPI_Comm_free(&globalCpuWorld); CHK;
+ ierr = MPI_Comm_free(&localCpuWorld); CHK;
+ ierr = MPI_Comm_free(&devWorld); CHK;
+
+ // decrease the number of instances
+ count -= 1;
+
+ // change status
+ isInitialized = false;
+
+ PetscFunctionReturn(0);
+}
+
+
+/* \implements AmgXSolver::setA */
+PetscErrorCode AmgXSolver::setA(
+ const PetscInt nGlobalRows,
+ const PetscInt nLocalRows,
+ const PetscInt nLocalNz,
+ const PetscInt* rowOffsets,
+ const PetscInt* colIndicesGlobal,
+ const PetscScalar* values,
+ const PetscInt* partData)
+{
+ PetscFunctionBeginUser;
+
+ // Merge the distributed matrix for MPI processes sharing a GPU
+ consolidateMatrix(nLocalRows, nLocalNz, rowOffsets, colIndicesGlobal, values);
+
+ int ierr;
+
+ // upload matrix A to AmgX
+ if (gpuWorld != MPI_COMM_NULL)
+ {
+ ierr = MPI_Barrier(gpuWorld); CHK;
+
+ if (consolidationStatus == ConsolidationStatus::None)
+ {
+ AMGX_matrix_upload_all_global_32(
+ AmgXA, nGlobalRows, nLocalRows, nLocalNz,
+ 1, 1, rowOffsets, colIndicesGlobal, values,
+ nullptr, ring, ring, partData);
+ }
+ else
+ {
+ AMGX_matrix_upload_all_global_32(
+ AmgXA, nGlobalRows, nConsRows, nConsNz,
+ 1, 1, rowOffsetsCons, colIndicesGlobalCons, valuesCons,
+ nullptr, ring, ring, partData);
+
+ // The rowOffsets and colIndices are no longer needed
+ freeConsStructure();
+ }
+
+ // bind the matrix A to the solver
+ ierr = MPI_Barrier(gpuWorld); CHK;
+ AMGX_solver_setup(solver, AmgXA);
+
+ // connect (bind) vectors to the matrix
+ AMGX_vector_bind(AmgXP, AmgXA);
+ AMGX_vector_bind(AmgXRHS, AmgXA);
+ }
+ ierr = MPI_Barrier(globalCpuWorld); CHK;
+
+ PetscFunctionReturn(0);
+}
+
+
+/* \implements AmgXSolver::updateA */
+PetscErrorCode AmgXSolver::updateA(
+ const PetscInt nLocalRows,
+ const PetscInt nLocalNz,
+ const PetscScalar* values)
+{
+ PetscFunctionBeginUser;
+
+ // Merges the values from multiple MPI processes sharing a single GPU
+ reconsolidateValues(nLocalNz, values);
+
+ int ierr;
+ // Replace the coefficients for the CSR matrix A within AmgX
+ if (gpuWorld != MPI_COMM_NULL)
+ {
+ ierr = MPI_Barrier(gpuWorld); CHK;
+
+ if (consolidationStatus == ConsolidationStatus::None)
+ {
+ AMGX_matrix_replace_coefficients(AmgXA, nLocalRows, nLocalNz, values, nullptr);
+ }
+ else
+ {
+ AMGX_matrix_replace_coefficients(AmgXA, nConsRows, nConsNz, valuesCons, nullptr);
+ }
+
+ ierr = MPI_Barrier(gpuWorld); CHK;
+
+ // Re-setup the solver (a reduced overhead setup that accounts for consistent matrix structure)
+ AMGX_solver_resetup(solver, AmgXA);
+ }
+
+ ierr = MPI_Barrier(globalCpuWorld); CHK;
+
+ PetscFunctionReturn(0);
+}
+
+
/* \implements AmgXSolver::solve */
PetscErrorCode AmgXSolver::solve(Vec& p, Vec &b, const int nRows)
{
@@ -171,30 +458,6 @@ PetscErrorCode AmgXSolver::solve(Vec& p, Vec &b, const int nRows)
}
-/* \implements AmgXSolver::setMode */
-PetscErrorCode AmgXSolver::setMode(const std::string &modeStr)
-{
- PetscFunctionBeginUser;
-
- if (modeStr == "dDDI")
- mode = AMGX_mode_dDDI;
- else if (modeStr == "dDFI")
- mode = AMGX_mode_dDFI;
- else if (modeStr == "dFFI")
- mode = AMGX_mode_dFFI;
- else if (modeStr[0] == 'h')
- SETERRQ1(MPI_COMM_WORLD, PETSC_ERR_ARG_WRONG,
- "CPU mode, %s, is not supported in this wrapper!",
- modeStr.c_str());
- else
- SETERRQ1(MPI_COMM_WORLD, PETSC_ERR_ARG_WRONG,
- "%s is not an available mode! Available modes are: "
- "dDDI, dDFI, dFFI.\n", modeStr.c_str());
-
- PetscFunctionReturn(0);
-}
-
-
/* \implements AmgXSolver::getIters */
PetscErrorCode AmgXSolver::getIters(int &iter)
{
diff --git a/src/init.cu b/src/init.cu
deleted file mode 100644
index d6afcd7..0000000
--- a/src/init.cu
+++ /dev/null
@@ -1,336 +0,0 @@
-/**
- * \file init.cpp
- * \brief Definition of some member functions of the class AmgXSolver.
- * \author Pi-Yueh Chuang (pychuang@gwu.edu)
- * \date 2016-01-08
- * \copyright Copyright (c) 2015-2019 Pi-Yueh Chuang, Lorena A. Barba.
- * This project is released under MIT License.
- */
-
-
-// CUDA
-# include <cuda_runtime.h>
-
-// AmgXSolver
-# include "AmgXSolver.H"
-# include <iostream>
-
-/* \implements AmgXSolver::AmgXSolver */
-AmgXSolver::AmgXSolver(const MPI_Comm &comm,
- const std::string &modeStr, const std::string &cfgFile)
-{
- initialize(comm, modeStr, cfgFile);
-}
-
-
-/* \implements AmgXSolver::~AmgXSolver */
-AmgXSolver::~AmgXSolver()
-{
- if (isInitialized) finalize();
-}
-
-
-/* \implements AmgXSolver::initialize */
-PetscErrorCode AmgXSolver::initialize(const MPI_Comm &comm,
- const std::string &modeStr, const std::string &cfgFile)
-{
- PetscErrorCode ierr;
-
- PetscFunctionBeginUser;
-
- // if this instance has already been initialized, skip
- if (isInitialized) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE,
- "This AmgXSolver instance has been initialized on this process.");
-
- // increase the number of AmgXSolver instances
- count += 1;
-
- // get the name of this node
- int len;
- char name[MPI_MAX_PROCESSOR_NAME];
- ierr = MPI_Get_processor_name(name, &len); CHK;
- nodeName = name;
-
- // get the mode of AmgX solver
- ierr = setMode(modeStr); CHK;
-
- // initialize communicators and corresponding information
- ierr = initMPIcomms(comm); CHK;
-
- // only processes in gpuWorld are required to initialize AmgX
- if (gpuProc == 0)
- {
- ierr = initAmgX(cfgFile); CHK;
- }
-
- // a bool indicating if this instance is initialized
- isInitialized = true;
-
- consolidationStatus = ConsolidationStatus::Uninitialized;
-
- PetscFunctionReturn(0);
-}
-
-
-/* \implements AmgXSolver::initMPIcomms */
-PetscErrorCode AmgXSolver::initMPIcomms(const MPI_Comm &comm)
-{
- PetscErrorCode ierr;
-
- PetscFunctionBeginUser;
-
- // duplicate the global communicator
- ierr = MPI_Comm_dup(comm, &globalCpuWorld); CHK;
- ierr = MPI_Comm_set_name(globalCpuWorld, "globalCpuWorld"); CHK;
-
- // get size and rank for global communicator
- ierr = MPI_Comm_size(globalCpuWorld, &globalSize); CHK;
- ierr = MPI_Comm_rank(globalCpuWorld, &myGlobalRank); CHK;
-
-
- // Get the communicator for processors on the same node (local world)
- ierr = MPI_Comm_split_type(globalCpuWorld,
- MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &localCpuWorld); CHK;
- ierr = MPI_Comm_set_name(localCpuWorld, "localCpuWorld"); CHK;
-
- // get size and rank for local communicator
- ierr = MPI_Comm_size(localCpuWorld, &localSize); CHK;
- ierr = MPI_Comm_rank(localCpuWorld, &myLocalRank); CHK;
-
-
- // set up the variable nDevs
- ierr = setDeviceCount(); CHK;
-
-
- // set up corresponding ID of the device used by each local process
- ierr = setDeviceIDs(); CHK;
- ierr = MPI_Barrier(globalCpuWorld); CHK;
-
-
- // split the global world into a world involved in AmgX and a null world
- ierr = MPI_Comm_split(globalCpuWorld, gpuProc, 0, &gpuWorld); CHK;
-
- // get size and rank for the communicator corresponding to gpuWorld
- if (gpuWorld != MPI_COMM_NULL)
- {
- ierr = MPI_Comm_set_name(gpuWorld, "gpuWorld"); CHK;
- ierr = MPI_Comm_size(gpuWorld, &gpuWorldSize); CHK;
- ierr = MPI_Comm_rank(gpuWorld, &myGpuWorldRank); CHK;
- }
- else // for those can not communicate with GPU devices
- {
- gpuWorldSize = MPI_UNDEFINED;
- myGpuWorldRank = MPI_UNDEFINED;
- }
-
- // split local world into worlds corresponding to each CUDA device
- ierr = MPI_Comm_split(localCpuWorld, devID, 0, &devWorld); CHK;
- ierr = MPI_Comm_set_name(devWorld, "devWorld"); CHK;
-
- // get size and rank for the communicator corresponding to myWorld
- ierr = MPI_Comm_size(devWorld, &devWorldSize); CHK;
- ierr = MPI_Comm_rank(devWorld, &myDevWorldRank); CHK;
-
- ierr = MPI_Barrier(globalCpuWorld); CHK;
-
- return 0;
-}
-
-
-/* \implements AmgXSolver::setDeviceCount */
-PetscErrorCode AmgXSolver::setDeviceCount()
-{
- PetscFunctionBeginUser;
-
- // get the number of devices that AmgX solvers can use
- switch (mode)
- {
- case AMGX_mode_dDDI: // for GPU cases, nDevs is the # of local GPUs
- case AMGX_mode_dDFI: // for GPU cases, nDevs is the # of local GPUs
- case AMGX_mode_dFFI: // for GPU cases, nDevs is the # of local GPUs
- // get the number of total cuda devices
- CHECK(cudaGetDeviceCount(&nDevs));
- std::cout << "Number of GPU devices :: " << nDevs << std::endl;
-
- // Check whether there is at least one CUDA device on this node
- if (nDevs == 0) SETERRQ1(MPI_COMM_WORLD, PETSC_ERR_SUP_SYS,
- "There is no CUDA device on the node %s !\n", nodeName.c_str());
- break;
- case AMGX_mode_hDDI: // for CPU cases, nDevs is the # of local processes
- case AMGX_mode_hDFI: // for CPU cases, nDevs is the # of local processes
- case AMGX_mode_hFFI: // for CPU cases, nDevs is the # of local processes
- default:
- nDevs = localSize;
- break;
- }
-
- PetscFunctionReturn(0);
-}
-
-
-/* \implements AmgXSolver::setDeviceIDs */
-PetscErrorCode AmgXSolver::setDeviceIDs()
-{
- PetscFunctionBeginUser;
-
- PetscErrorCode ierr;
-
- // set the ID of device that each local process will use
- if (nDevs == localSize) // # of the devices and local precosses are the same
- {
- devID = myLocalRank;
- gpuProc = 0;
- }
- else if (nDevs > localSize) // there are more devices than processes
- {
- ierr = PetscPrintf(localCpuWorld, "CUDA devices on the node %s "
- "are more than the MPI processes launched. Only %d CUDA "
- "devices will be used.\n", nodeName.c_str(), localSize); CHK;
-
- devID = myLocalRank;
- gpuProc = 0;
- }
- else // there more processes than devices
- {
- int nBasic = localSize / nDevs,
- nRemain = localSize % nDevs;
-
- if (myLocalRank < (nBasic+1)*nRemain)
- {
- devID = myLocalRank / (nBasic + 1);
- if (myLocalRank % (nBasic + 1) == 0) gpuProc = 0;
- }
- else
- {
- devID = (myLocalRank - (nBasic+1)*nRemain) / nBasic + nRemain;
- if ((myLocalRank - (nBasic+1)*nRemain) % nBasic == 0) gpuProc = 0;
- }
- }
-
- // Set the device for each rank
- cudaSetDevice(devID);
-
- PetscFunctionReturn(0);
-}
-
-
-/* \implements AmgXSolver::initAmgX */
-PetscErrorCode AmgXSolver::initAmgX(const std::string &cfgFile)
-{
- PetscFunctionBeginUser;
-
- // only the first instance (AmgX solver) is in charge of initializing AmgX
- if (count == 1)
- {
- // initialize AmgX
- AMGX_SAFE_CALL(AMGX_initialize());
-
- // intialize AmgX plugings
- AMGX_SAFE_CALL(AMGX_initialize_plugins());
-
- // only the master process can output something on the screen
- AMGX_SAFE_CALL(AMGX_register_print_callback(
- [](const char *msg, int length)->void
- {PetscPrintf(PETSC_COMM_WORLD, "%s", msg);}));
-
- // let AmgX to handle errors returned
- AMGX_SAFE_CALL(AMGX_install_signal_handler());
- }
-
- // create an AmgX configure object
- AMGX_SAFE_CALL(AMGX_config_create_from_file(&cfg, cfgFile.c_str()));
-
- // let AmgX handle returned error codes internally
- AMGX_SAFE_CALL(AMGX_config_add_parameters(&cfg, "exception_handling=1"));
-
- // create an AmgX resource object, only the first instance is in charge
- if (count == 1) AMGX_resources_create(&rsrc, cfg, &gpuWorld, 1, &devID);
-
- // create AmgX vector object for unknowns and RHS
- AMGX_vector_create(&AmgXP, rsrc, mode);
- AMGX_vector_create(&AmgXRHS, rsrc, mode);
-
- // create AmgX matrix object for unknowns and RHS
- AMGX_matrix_create(&AmgXA, rsrc, mode);
-
- // create an AmgX solver object
- AMGX_solver_create(&solver, rsrc, mode, cfg);
-
- // obtain the default number of rings based on current configuration
- AMGX_config_get_default_number_of_rings(cfg, &ring);
-
- PetscFunctionReturn(0);
-}
-
-
-/* \implements AmgXSolver::finalize */
-PetscErrorCode AmgXSolver::finalize()
-{
- PetscErrorCode ierr;
-
- PetscFunctionBeginUser;
-
- // skip if this instance has not been initialized
- if (! isInitialized)
- {
- ierr = PetscPrintf(PETSC_COMM_WORLD,
- "This AmgXWrapper has not been initialized. "
- "Please initialize it before finalization.\n"); CHK;
-
- PetscFunctionReturn(0);
- }
-
- // only processes using GPU are required to destroy AmgX content
- if (gpuProc == 0)
- {
- // destroy solver instance
- AMGX_solver_destroy(solver);
-
- // destroy matrix instance
- AMGX_matrix_destroy(AmgXA);
-
- // destroy RHS and unknown vectors
- AMGX_vector_destroy(AmgXP);
- AMGX_vector_destroy(AmgXRHS);
-
- // only the last instance need to destroy resource and finalizing AmgX
- if (count == 1)
- {
- AMGX_resources_destroy(rsrc);
- AMGX_SAFE_CALL(AMGX_config_destroy(cfg));
-
- AMGX_SAFE_CALL(AMGX_finalize_plugins());
- AMGX_SAFE_CALL(AMGX_finalize());
- }
- else
- {
- AMGX_config_destroy(cfg);
- }
-
- // destroy gpuWorld
- ierr = MPI_Comm_free(&gpuWorld); CHK;
- }
-
- finalizeConsolidation();
-
- // destroy PETSc objects
- ierr = VecScatterDestroy(&scatterLhs); CHK;
- ierr = VecScatterDestroy(&scatterRhs); CHK;
- ierr = VecDestroy(&redistLhs); CHK;
- ierr = VecDestroy(&redistRhs); CHK;
-
- // re-set necessary variables in case users want to reuse
- // the variable of this instance for a new instance
- gpuProc = MPI_UNDEFINED;
- ierr = MPI_Comm_free(&globalCpuWorld); CHK;
- ierr = MPI_Comm_free(&localCpuWorld); CHK;
- ierr = MPI_Comm_free(&devWorld); CHK;
-
- // decrease the number of instances
- count -= 1;
-
- // change status
- isInitialized = false;
-
- PetscFunctionReturn(0);
-}
diff --git a/src/setA.cu b/src/setA.cu
deleted file mode 100644
index 1007e11..0000000
--- a/src/setA.cu
+++ /dev/null
@@ -1,490 +0,0 @@
-/**
- * \file setA.cpp
- * \brief Definition of member functions regarding setting A in AmgXSolver.
- * \author Pi-Yueh Chuang (pychuang@gwu.edu)
- * \date 2016-01-08
- * \copyright Copyright (c) 2015-2019 Pi-Yueh Chuang, Lorena A. Barba.
- * \copyright Copyright (c) 2019, NVIDIA CORPORATION. All rights reserved.
- * This project is released under MIT License.
- */
-
-
-// STD
-# include <cstring>
-# include <algorithm>
-#include <iostream>
-
-// AmgXSolver
-# include "AmgXSolver.H"
-
-
-/* \implements AmgXSolver::setA */
-PetscErrorCode AmgXSolver::setA(const Mat &A)
-{
- PetscFunctionBeginUser;
-
- PetscErrorCode ierr;
-
- Mat localA;
-
- IS devIS;
-
- PetscInt nGlobalRows,
- nLocalRows;
- PetscBool usesOffsets;
-
- std::vector<PetscInt> row;
- std::vector<PetscInt64> col;
- std::vector<PetscScalar> data;
- std::vector<PetscInt> partData;
-
-
- // get number of rows in global matrix
- ierr = MatGetSize(A, &nGlobalRows, nullptr); CHK;
-
- // get the row indices of redistributed matrix owned by processes in gpuWorld
- ierr = getDevIS(A, devIS); CHK;
-
- // get sequential local portion of redistributed matrix
- ierr = getLocalA(A, devIS, localA); CHK;
-
- // get compressed row layout of the local Mat
- ierr = getLocalMatRawData(localA, nLocalRows, row, col, data); CHK;
-
- // destroy local matrix
- ierr = destroyLocalA(A, localA); CHK;
-
- // get a partition vector required by AmgX
- ierr = getPartData(devIS, nGlobalRows, partData, usesOffsets); CHK;
-
-
- // upload matrix A to AmgX
- if (gpuWorld != MPI_COMM_NULL)
- {
- ierr = MPI_Barrier(gpuWorld); CHK;
- // offsets need to be 64 bit, since we use 64 bit column indices
- std::vector<PetscInt64> offsets;
-
- AMGX_distribution_handle dist;
- AMGX_distribution_create(&dist, cfg);
- if (usesOffsets) {
- offsets.assign(partData.begin(), partData.end());
- AMGX_distribution_set_partition_data(dist, AMGX_DIST_PARTITION_OFFSETS, offsets.data());
- } else {
- AMGX_distribution_set_partition_data(dist, AMGX_DIST_PARTITION_VECTOR, partData.data());
- }
-
- AMGX_matrix_upload_distributed(
- AmgXA, nGlobalRows, nLocalRows, row[nLocalRows],
- 1, 1, row.data(), col.data(), data.data(),
- nullptr, dist);
- AMGX_distribution_destroy(dist);
-
- // bind the matrix A to the solver
- ierr = MPI_Barrier(gpuWorld); CHK;
- AMGX_solver_setup(solver, AmgXA);
-
- // connect (bind) vectors to the matrix
- AMGX_vector_bind(AmgXP, AmgXA);
- AMGX_vector_bind(AmgXRHS, AmgXA);
- }
- ierr = MPI_Barrier(globalCpuWorld); CHK;
-
- // destroy temporary PETSc objects
- ierr = ISDestroy(&devIS); CHK;
-
- PetscFunctionReturn(0);
-}
-
-
-/* \implements AmgXSolver::getDevIS */
-PetscErrorCode AmgXSolver::getDevIS(const Mat &A, IS &devIS)
-{
- PetscFunctionBeginUser;
-
- PetscErrorCode ierr;
- IS tempIS;
-
- // get index sets of A locally owned by each process
- // note that devIS is now a serial IS on each process
- ierr = MatGetOwnershipIS(A, &devIS, nullptr); CHK;
-
- // concatenate index sets that belong to the same devWorld
- // note that now devIS is a parallel IS of communicator devWorld
- ierr = ISOnComm(devIS, devWorld, PETSC_USE_POINTER, &tempIS); CHK;
- ierr = ISDestroy(&devIS); CHK;
-
- // all gather in order to have all indices belong to a devWorld on the
- // leading rank of that devWorld. THIS IS NOT EFFICIENT!!
- // note that now devIS is again a serial IS on each process
- ierr = ISAllGather(tempIS, &devIS); CHK;
- ierr = ISDestroy(&tempIS); CHK;
-
- // empty devIS on ranks other than the leading ranks in each devWorld
- if (myDevWorldRank != 0)
- ierr = ISGeneralSetIndices(devIS, 0, nullptr, PETSC_COPY_VALUES); CHK;
-
- // devIS is not guaranteed to be sorted. We sort it here.
- ierr = ISSort(devIS); CHK;
-
- PetscFunctionReturn(0);
-}
-
-
-/* \implements AmgXSolver::getLocalA */
-PetscErrorCode AmgXSolver::getLocalA(const Mat &A, const IS &devIS, Mat &localA)
-{
- PetscFunctionBeginUser;
-
- PetscErrorCode ierr;
- MatType type;
-
- // get the Mat type
- ierr = MatGetType(A, &type); CHK;
-
- // check whether the Mat type is supported
- if (std::strcmp(type, MATSEQAIJ) == 0) // sequential AIJ
- {
- // make localA point to the same memory space as A does
- localA = A;
- }
- else if (std::strcmp(type, MATMPIAIJ) == 0)
- {
- Mat tempA;
-
- // redistribute matrix and also get corresponding scatters.
- ierr = redistMat(A, devIS, tempA); CHK;
-
- // get local matrix from redistributed matrix
- ierr = MatMPIAIJGetLocalMat(tempA, MAT_INITIAL_MATRIX, &localA); CHK;
-
- // destroy redistributed matrix
- if (tempA == A)
- {
- tempA = nullptr;
- }
- else
- {
- ierr = MatDestroy(&tempA); CHK;
- }
- }
- else
- {
- SETERRQ1(globalCpuWorld, PETSC_ERR_ARG_WRONG,
- "Mat type %s is not supported!\n", type);
- }
-
- PetscFunctionReturn(0);
-}
-
-
-/* \implements AmgXSolver::redistMat */
-PetscErrorCode AmgXSolver::redistMat(const Mat &A, const IS &devIS, Mat &newA)
-{
- PetscFunctionBeginUser;
-
- PetscErrorCode ierr;
-
- if (gpuWorldSize == globalSize) // no redistributation required
- {
- newA = A;
- }
- else
- {
- IS is;
-
- // re-set the communicator of devIS to globalCpuWorld
- ierr = ISOnComm(devIS, globalCpuWorld, PETSC_USE_POINTER, &is); CHK;
-
- // redistribute the matrix A to newA
- ierr = MatGetSubMatrix(A, is, is, MAT_INITIAL_MATRIX, &newA); CHK;
-
- // get VecScatters between original data layout and the new one
- ierr = getVecScatter(A, newA, is); CHK;
-
- // destroy the temporary IS
- ierr = ISDestroy(&is); CHK;
- }
-
- PetscFunctionReturn(0);
-}
-
-
-/* \implements AmgXSolver::getVecScatter */
-PetscErrorCode AmgXSolver::getVecScatter(
- const Mat &A1, const Mat &A2, const IS &devIS)
-{
- PetscFunctionBeginUser;
-
- PetscErrorCode ierr;
-
- Vec tempLhs;
- Vec tempRhs;
-
- ierr = MatCreateVecs(A1, &tempLhs, &tempRhs); CHK;
- ierr = MatCreateVecs(A2, &redistLhs, &redistRhs); CHK;
-
- ierr = VecScatterCreate(tempLhs, devIS, redistLhs, devIS, &scatterLhs); CHK;
- ierr = VecScatterCreate(tempRhs, devIS, redistRhs, devIS, &scatterRhs); CHK;
-
- ierr = VecDestroy(&tempRhs); CHK;
- ierr = VecDestroy(&tempLhs); CHK;
-
- PetscFunctionReturn(0);
-}
-
-
-/* \implements AmgXSolver::getLocalMatRawData */
-PetscErrorCode AmgXSolver::getLocalMatRawData(const Mat &localA,
- PetscInt &localN, std::vector<PetscInt> &row,
- std::vector<PetscInt64> &col, std::vector<PetscScalar> &data)
-{
- PetscFunctionBeginUser;
-
- PetscErrorCode ierr;
-
- const PetscInt *rawCol,
- *rawRow;
-
- PetscScalar *rawData;
-
- PetscInt rawN;
-
- PetscBool done;
-
- // get row and column indices in compressed row format
- ierr = MatGetRowIJ(localA, 0, PETSC_FALSE, PETSC_FALSE,
- &rawN, &rawRow, &rawCol, &done); CHK;
-
- // rawN will be returned by MatRestoreRowIJ, so we have to copy it
- localN = rawN;
-
- // check if the function worked
- if (! done)
- SETERRQ(globalCpuWorld, PETSC_ERR_SIG, "MatGetRowIJ did not work!");
-
- // get data
- ierr = MatSeqAIJGetArray(localA, &rawData); CHK;
-
- // copy values to STL vector. Note: there is an implicit conversion from
- // PetscInt to PetscInt64 for the column vector
- col.assign(rawCol, rawCol+rawRow[localN]);
- row.assign(rawRow, rawRow+localN+1);
- data.assign(rawData, rawData+rawRow[localN]);
-
-
- // return ownership of memory space to PETSc
- ierr = MatRestoreRowIJ(localA, 0, PETSC_FALSE, PETSC_FALSE,
- &rawN, &rawRow, &rawCol, &done); CHK;
-
- // check if the function worked
- if (! done)
- SETERRQ(globalCpuWorld, PETSC_ERR_SIG, "MatRestoreRowIJ did not work!");
-
- // return ownership of memory space to PETSc
- ierr = MatSeqAIJRestoreArray(localA, &rawData); CHK;
-
- PetscFunctionReturn(0);
-}
-
-
-/* \implements AmgXSolver::destroyLocalA */
-PetscErrorCode AmgXSolver::destroyLocalA(const Mat &A, Mat &localA)
-{
- PetscFunctionBeginUser;
-
- PetscErrorCode ierr;
-
- MatType type;
-
- // Get the Mat type
- ierr = MatGetType(A, &type); CHK;
-
- // when A is sequential, we can not destroy the memory space
- if (std::strcmp(type, MATSEQAIJ) == 0)
- {
- localA = nullptr;
- }
- // for parallel case, localA can be safely destroyed
- else if (std::strcmp(type, MATMPIAIJ) == 0)
- {
- ierr = MatDestroy(&localA); CHK;
- }
-
- PetscFunctionReturn(0);
-}
-
-/* \implements AmgXSolver::checkForContiguousPartitioning */
-PetscErrorCode AmgXSolver::checkForContiguousPartitioning(
- const IS &devIS, PetscBool &isContiguous, std::vector<PetscInt> &partOffsets)
-{
- PetscFunctionBeginUser;
- PetscErrorCode ierr;
- PetscBool sorted;
- PetscInt ismax= -2; // marker for "unsorted", allows to check after global sort
-
- ierr = ISSorted(devIS, &sorted); CHK;
- if (sorted)
- {
- ierr = ISGetMinMax(devIS, NULL, &ismax); CHK;
- }
- partOffsets.resize(gpuWorldSize);
- ++ismax; // add 1 to allow reusing gathered ismax values as partition offsets for AMGX
- MPI_Allgather(&ismax, 1, MPIU_INT, &partOffsets[0], 1, MPIU_INT, gpuWorld);
- bool all_sorted = std::is_sorted(partOffsets.begin(), partOffsets.end())
- && partOffsets[0] != -1;
- if (all_sorted)
- {
- partOffsets.insert(partOffsets.begin(), 0); // partition 0 always starts at 0
- isContiguous = PETSC_TRUE;
- }
- else
- {
- isContiguous = PETSC_FALSE;
- }
- PetscFunctionReturn(0);
-}
-
-
-/* \implements AmgXSolver::getPartData */
-PetscErrorCode AmgXSolver::getPartData(
- const IS &devIS, const PetscInt &N, std::vector<PetscInt> &partData, PetscBool &usesOffsets)
-{
- PetscFunctionBeginUser;
-
- PetscErrorCode ierr;
-
- VecScatter scatter;
- Vec tempMPI,
- tempSEQ;
-
- PetscInt n;
- PetscScalar *tempPartVec;
-
- ierr = ISGetLocalSize(devIS, &n); CHK;
-
- if (gpuWorld != MPI_COMM_NULL)
- {
- // check if sorted/contiguous, then we can skip expensive scatters
- checkForContiguousPartitioning(devIS, usesOffsets, partData);
- if (!usesOffsets)
- {
- ierr = VecCreateMPI(gpuWorld, n, N, &tempMPI); CHK;
-
- IS is;
- ierr = ISOnComm(devIS, gpuWorld, PETSC_USE_POINTER, &is); CHK;
- ierr = VecISSet(tempMPI, is, (PetscScalar) myGpuWorldRank); CHK;
- ierr = ISDestroy(&is); CHK;
-
- ierr = VecScatterCreateToAll(tempMPI, &scatter, &tempSEQ); CHK;
- ierr = VecScatterBegin(scatter,
- tempMPI, tempSEQ, INSERT_VALUES, SCATTER_FORWARD); CHK;
- ierr = VecScatterEnd(scatter,
- tempMPI, tempSEQ, INSERT_VALUES, SCATTER_FORWARD); CHK;
- ierr = VecScatterDestroy(&scatter); CHK;
- ierr = VecDestroy(&tempMPI); CHK;
-
- ierr = VecGetArray(tempSEQ, &tempPartVec); CHK;
-
- partData.assign(tempPartVec, tempPartVec+N);
-
- ierr = VecRestoreArray(tempSEQ, &tempPartVec); CHK;
-
- ierr = VecDestroy(&tempSEQ); CHK;
- }
- }
- ierr = MPI_Barrier(globalCpuWorld); CHK;
-
- PetscFunctionReturn(0);
-}
-
-
-/* \implements AmgXSolver::setA */
-PetscErrorCode AmgXSolver::setA(
- const PetscInt nGlobalRows,
- const PetscInt nLocalRows,
- const PetscInt nLocalNz,
- const PetscInt* rowOffsets,
- const PetscInt* colIndicesGlobal,
- const PetscScalar* values,
- const PetscInt* partData)
-{
- PetscFunctionBeginUser;
-
- // Merge the distributed matrix for MPI processes sharing a GPU
- consolidateMatrix(nLocalRows, nLocalNz, rowOffsets, colIndicesGlobal, values);
-
- int ierr;
-
- // upload matrix A to AmgX
- if (gpuWorld != MPI_COMM_NULL)
- {
- ierr = MPI_Barrier(gpuWorld); CHK;
-
- if (consolidationStatus == ConsolidationStatus::None)
- {
- AMGX_matrix_upload_all_global_32(
- AmgXA, nGlobalRows, nLocalRows, nLocalNz,
- 1, 1, rowOffsets, colIndicesGlobal, values,
- nullptr, ring, ring, partData);
- }
- else
- {
- AMGX_matrix_upload_all_global_32(
- AmgXA, nGlobalRows, nConsRows, nConsNz,
- 1, 1, rowOffsetsCons, colIndicesGlobalCons, valuesCons,
- nullptr, ring, ring, partData);
-
- // The rowOffsets and colIndices are no longer needed
- freeConsStructure();
- }
-
- // bind the matrix A to the solver
- ierr = MPI_Barrier(gpuWorld); CHK;
- AMGX_solver_setup(solver, AmgXA);
-
- // connect (bind) vectors to the matrix
- AMGX_vector_bind(AmgXP, AmgXA);
- AMGX_vector_bind(AmgXRHS, AmgXA);
- }
- ierr = MPI_Barrier(globalCpuWorld); CHK;
-
- PetscFunctionReturn(0);
-}
-
-/* \implements AmgXSolver::updateA */
-PetscErrorCode AmgXSolver::updateA(
- const PetscInt nLocalRows,
- const PetscInt nLocalNz,
- const PetscScalar* values)
-{
- PetscFunctionBeginUser;
-
- // Merges the values from multiple MPI processes sharing a single GPU
- reconsolidateValues(nLocalNz, values);
-
- int ierr;
- // Replace the coefficients for the CSR matrix A within AmgX
- if (gpuWorld != MPI_COMM_NULL)
- {
- ierr = MPI_Barrier(gpuWorld); CHK;
-
- if (consolidationStatus == ConsolidationStatus::None)
- {
- AMGX_matrix_replace_coefficients(AmgXA, nLocalRows, nLocalNz, values, nullptr);
- }
- else
- {
- AMGX_matrix_replace_coefficients(AmgXA, nConsRows, nConsNz, valuesCons, nullptr);
- }
-
- ierr = MPI_Barrier(gpuWorld); CHK;
-
- // Re-setup the solver (a reduced overhead setup that accounts for consistent matrix structure)
- AMGX_solver_resetup(solver, AmgXA);
- }
-
- ierr = MPI_Barrier(globalCpuWorld); CHK;
-
- PetscFunctionReturn(0);
-}
--
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